The former Dundee United defender, who is now at Hull City, withdrew on Wednesday with a calf strain.
The 20-year-old tweeted: "Gutted to be injured but hopefully back for West Ham. Good luck to all the boys."
Scotland open their Group D campaign against World Cup winners Germany in Dortmund.
Watch Scotland's European Qualifier away to Germany live on Sky Sports 5 HD on Sunday, with coverage underway from 7.15pm.